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Gaetan De Waele

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2026
[j4]
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  - journals/bioinformatics/TourneWVW26
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  - https://dblp.org/rec/journals/bioinformatics/TourneWVW26
Natan Tourne, Gaetan De Waele, Vanessa Vermeirssen, Willem Waegeman:
How negative sampling shapes the performance of transcription factor binding site prediction models. Bioinform. 42(2) (2026)
[j3]
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  - journals/jcisd/RakhshaninejadWJW26
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Morteza Rakhshaninejad, Gaetan De Waele, Mira Jürgens, Willem Waegeman:
Reliable Molecular Retrieval from Mass Spectra Using Conformal Prediction. J. Chem. Inf. Model. 66(10): 5788-5800 (2026)
[i2]
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  - journals/corr/abs-2602-16507
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Gaetan De Waele, Marek Wydmuch, Krzysztof Dembczynski, Wojciech Kotlowski, Willem Waegeman:
Small molecule retrieval from tandem mass spectrometry: what are we optimizing for? CoRR abs/2602.16507 (2026)
[i1]
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  - journals/corr/abs-2603-10950
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Mira Jürgens, Gaetan De Waele, Morteza Rakhshaninejad, Willem Waegeman:
When should we trust the annotation? Selective prediction for molecular structure retrieval from mass spectra. CoRR abs/2603.10950 (2026)
2025
[j2]
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  - journals/cbm/WaeleMVW25
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Gaetan De Waele, Gerben Menschaert, Peter Vandamme, Willem Waegeman:
Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction. Comput. Biol. Medicine 186: 109695 (2025)
2022
[j1]
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  - journals/bioinformatics/WaeleCMW22
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Gaetan De Waele, Jim Clauwaert, Gerben Menschaert, Willem Waegeman:
CpG Transformer for imputation of single-cell methylomes. Bioinform. 38(3): 597-603 (2022)

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