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ORCIDIWBBIO 2022: Maspalomas, Gran Canaria, Spain - Part II
- Ignacio Rojas
, Olga Valenzuela, Fernando Rojas, Luis Javier Herrera, Francisco M. Ortuño:
Bioinformatics and Biomedical Engineering - 9th International Work-Conference, IWBBIO 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022, Proceedings, Part II. Lecture Notes in Computer Science 13347, Springer 2022, ISBN 978-3-031-07801-9
Chip-Seq and RNA-Seq Analysis
- Sahar Qazi, Khalid Raza:
Integrative Analysis of Ovarian Serious Adenocarcinoma to Understand Disease Network Biology. 3-17 - Lorenzo Martini, Roberta Bardini, Alessandro Savino, Stefano Di Carlo:
GAGAM: A Genomic Annotation-Based Enrichment of scATAC-seq Data for Gene Activity Matrix. 18-32 - Anna Mrukwa, Michal Marczyk, Joanna Zyla:
Finding Significantly Enriched Cells in Single-Cell RNA Sequencing by Single-Sample Approaches. 33-44 - Karel Sedlár, Ralf Zimmer:
Comparison of Stranded and Non-stranded RNA-Seq in Predicting Small RNAs in a Non-model Bacterium. 45-56 - Felitsiya Shakola, Dean Palejev, Ivan Ivanov:
Comparative Study of Synthetic Bulk RNA-Seq Generators. 57-70 - Hanna Slowik, Joanna Zyla, Michal Marczyk:
Investigating Sources of Zeros in 10× Single-Cell RNAseq Data. 71-80
Bioinformatics and Biomarker Identification
- S. Patsiris, Themis P. Exarchos, Panayiotis M. Vlamos:
Exhaled Breath Condensate Study for Biomarkers Discovery. 83-89 - Iván Petrini, Rocío L. Cecchini, Marilina Mascaró, Ignacio Ponzoni, Jessica Andrea Carballido:
Statistical Learning Analysis of Thyroid Cancer Microarray Data. 90-102 - Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo R. Naiouf, Manuel Prieto-Matías:
Migrating CUDA to oneAPI: A Smith-Waterman Case Study. 103-116
Computational Proteomics
- Anna Glodek:
Fuzzy-Inference System for Isotopic Envelope Identification in Mass Spectrometry Imaging Data. 119-132 - Julie Ledoux, Luba Tchertanov:
Receptor Tyrosine Kinase KIT: A New Look for an Old Receptor. 133-137 - Julie Ledoux, Maxim Stolyarchuk, Luba Tchertanov:
Human Vitamin K Epoxide Reductase as a Target of Its Redox Protein. 138-141 - Douglas Soares Gonçalves, Antonio Mucherino:
A Distance Geometry Procedure Using the Levenberg-Marquardt Algorithm and with Applications in Biology but Not only. 142-152 - Akrem Sellami, Bishnu Sarker, Salvatore Tabbone, Marie-Dominique Devignes, Sabeur Aridhi:
A Semi-supervised Graph Deep Neural Network for Automatic Protein Function Annotation. 153-166
Computational Systems for Modelling Biological Processes
- Yana Nedorez, Michael G. Sadovsky:
Strong Prevalence of the Function over Taxonomy in Human tRNA Genes. 169-178 - Leonardo Giannantoni, Roberta Bardini, Stefano Di Carlo:
A Methodology for Co-simulation-Based Optimization of Biofabrication Protocols. 179-192 - Richard Oliver Matzko, Laurentiu Mierla, Savas Konur:
A 3D Multicellular Simulation Layer for the Synthetic Biology CAD Infobiotics Workbench Suite. 193-207 - Alessandro Mariotti, Emanuele Gasparotti, Emanuele Vignali, Pietro Marchese, Simona Celi, Maria-Vittoria Salvetti:
Integrating in-vivo Data in CFD Simulations and in in-vitro Experiments of the Hemodynamic in Healthy and Pathologic Thoracic Aorta. 208-219 - Alzbeta Bohiniková, Iveta Jancigová, Ivan Cimrák, James J. Feng:
Sensitivity Analysis of Adhesion in Computational Model of Elastic Doublet. 220-233 - Savíns Puertas-Martín, Juana López Redondo, Ester M. Garzón, Horacio Pérez Sánchez, Pilar M. Ortigosa:
Increasing the Accuracy of Optipharm's Virtual Screening Predictions by Implementing Molecular Flexibility. 234-245
Feature Selection, Extraction, and Data Mining in Bioinformatics: Approaches, Methods and Adaptations
- Jean Davidson, Grif Hawblitzel, McClain Kressman, Andrew Doud, Harsha Lakshmankumar, Ella Thomas, Paul Kim, Ava Jakusovszky, Paul Anderson:
Comparisons of Knowledge Graphs and Entity Extraction in Breast Cancer Subtyping Biomedical Text Analysis. 249-259 - José Diogo Marques dos Santos, José Paulo Marques dos Santos:
Towards XAI: Interpretable Shallow Neural Network Used to Model HCP's fMRI Motor Paradigm Data. 260-274 - Mario A. Gutierrez-Mondragon, Caroline König, Alfredo Vellido:
A Deep Learning-Based Method for Uncovering GPCR Ligand-Induced Conformational States Using Interpretability Techniques. 275-287 - Vojtech Barton, Helena Skutkova:
Data Transformation for Clustering Utilization for Feature Detection in Mass Spectrometry. 288-299 - Christophe Guyeux, Guislaine Refregier, Christophe Sola:
Spolmap: An Enriched Visualization of CRISPR Diversity. 300-308 - Joanna Tobiasz, Joanna Polanska:
How to Compare Various Clustering Outcomes? Metrices to Investigate Breast Cancer Patient Subpopulations Based on Proteomic Profiles. 309-318 - Michal Dobrovolny, Jakub Benes, Ondrej Krejcar, Ali Selamat:
Sperm-cell Detection Using YOLOv5 Architecture. 319-330
Machine Learning in Bioinformatics
- Akram Vasighizaker, Sheena Hora, Yash Trivedi, Luis Rueda:
Comparative Analysis of Supervised Cell Type Detection in Single-Cell RNA-seq Data. 333-345 - Dani Livne, Sol Efroni:
PathWeigh - Quantifying the Behavior of Biochemical Pathway Cascades. 346-352 - Carlos Vega, Miroslav Kratochvíl, Venkata P. Satagopam, Reinhard Schneider:
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. 353-358 - Álvaro Torres-Martos, Augusto Anguita-Ruiz, Mireia Bustos-Aibar, Sofia Cámara-Sánchez, Rafael Alcalá, Concepción Maria Aguilera, Jesús Alcalá-Fdez:
Human Multi-omics Data Pre-processing for Predictive Purposes Using Machine Learning: A Case Study in Childhood Obesity. 359-374 - Ricardo Javier Fuentes-Fino, Saúl Calderón Ramírez, Enrique Domínguez, Ezequiel López-Rubio, Marco A. Hernandez-Vasquez, Miguel A. Molina-Cabello:
Feature Density as an Uncertainty Estimator Method in the Binary Classification Mammography Images Task for a Supervised Deep Learning Model. 375-388 - Olga Georgieva:
Iterative Clustering for Differential Gene Expression Analysis. 389-398 - Aleksandra Suwalska, Nelita du Plessis-Burger, Gian van der Spuy, Joanna Polanska:
Comparison of Batch Effect Removal Methods for High Dimensional Mass Cytometry Data. 399-410
Next Generation Sequencing and Sequence Analysis
- Shrikant D. Pawar, Karuna Mittal, Chandrajit Lahiri:
Evaluating Performance of Regression and Classification Models Using Known Lung Carcinomas Prognostic Markers. 413-418 - Luca Renders, Lore Depuydt, Jan Fostier:
Approximate Pattern Matching Using Search Schemes and In-Text Verification. 419-435 - Paola Bonizzoni, Alessia Petescia, Yuri Pirola, Raffaella Rizzi, Rocco Zaccagnino, Rosalba Zizza:
KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints. 436-449 - Justyna Mika, Serge M. Candéias, Christophe Badie, Joanna Polanska:
Can We Detect T Cell Receptors from Long-Read RNA-Seq Data? 450-463
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